科研成果 Academic Reports

2009年

1. Melcher, K., Ng, L., Zhou, X., Soon, F., Xu, Y., Suino-Powell, K., Park, S., Weiner, J., Fujii, H., Chinnusamy, V., Kovach, A., Li, J., Wang, Y., Li, J.,Peterson, F., Jensen, D., Yong, E., Volkman, B., Cutler, S., Zhu, J., and Xu, H. (2009). A gate–latch–lock mechanism for hormone signalling by abscisic acid receptors. Nature. 462: 602-608. (IF = 31.434C)

2. Huang, X., Qian, Q., Liu, Z., Sun, H., He, S., Luo, D., Xia, G., Chu, C., Li, J., and Fu, X. (2009). Natural variation at the DEP1 locus enhances grain yield in rice. Nature Genetics. 41(4): 494-497. (IF = 30.529C)

3. Tian, Z., Qian,Q., Liu, Q., Yan,M., Liu, X., Yan C., Liu G., Gao, Z., Tang, S., Zeng, D., Wang, Y., Yu, J., Gu, M., and Li, J. (2009). Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities. PNAS. 106(15): 21760-21765. (IF = 9.38A)

4. Wei, G., Tao, Y., Liu, G., Chen, C., Luo, R., Xia, H., Gan, Q., Zeng, H., Lu, Z., Han, Y., Li, X., Song, G., Zhai, H., Peng, Y., Li, D., Xu, H., Wei, X., Cao, M., Deng, H., Yuan, L., Yu, J., Zhu, Z., and Zhu, L. (2009). A transcriptomic analysis of superhybrid rice LYP9 and its parents.PNAS. 106: 7695-7701. (IF = 9.38A)

5. Lu, F., Ammiraju, J., Sanyal, A., Zhang, S., Song, R., Chen, J., Li, G., Sui, Y., Song, X., Cheng, Z., de Oliveira, A., Bennetzen, J., Jackson, S., Wing, R., and Chen, M. (2009). Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes. Proc. Natl. Acad. Sci. USA. 106: 2071-2076. (IF = 9.38A)

6. Ha, M., Lu, J., Tian, L., Ramachandran, V., Kasschau, K., Chapman, E., Carrington, J., Chen, X., Wang, X., and Chen, Z. (2009). Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids. Proceedings of the National Academy of Sciences. 106: 17835–17840. (IF = 9.38C)

7. Lin, H., Wang, R., Qian, Q., Yan, M., Meng, X., Fu, Z., Yan, C., Jiang, B., Su, Z., Li, J., and Wang, Y. (2009).DWARF27, an Iron-Containing Protein Required for the Biosynthesis of Strigolactones, Regulates Rice Tiller Bud Outgrowth. Plant Cell. 21:1512-1525. (IF = 9.296A)

8.  Sun, J.,Xu, Y., Ye, S., Jiang, H., Chen, Q., Liu, F.,Zhou, W., Chen, R., Li, X.,  Tietz, O., Wu, X., Cohen, J.,Palme, K., and Li, C. (2009). The Arabidopsis ASA1 gene is important for jasmonate-mediated regulation of auxin biosynthesis and transport during lateral root formation. Plant Cell.  21:1495-1511. (IF = 9.296A)

9. Wuriyanghan, H., Zhang, B., Cao, W., Ma, B., Lei, G., Liu, Y., Wei, W., Wu H., Chen, L., Chen, H., Cao, Y., He S.J., Zhang, W., Wang, X., Chen, S., and Zhang, J. (2009). The Ethylene Receptor ETR2 Delays Floral Transition and Affects Starch Accumulation in Rice. The Plant Cell. 21(5):1473-1494. (IF=9.296A)

10. Chen, H., Xue, L., Chintamanani, S., Germain, H., Lin, H., Cui, H., Cai, R., Zuo, J., Tang, X., Li, X., Guo, H., and Zhou, J. (2009). ETHYLENE INSENSITIVE3 and ETHYLENE INSENSITIVE3-LIKE1 repress SALICYLIC ACID INDUCTION DEFICIENT2 expression to negatively regulate plant innate immunity in Arabidopsis. Plant Cell. 21:2527-2540. (IF = 9.296B)

11. Wang, H., Zhu, Y., Fujioka, S., Asami, T., Li, J., and Li, J. (2009). Regulation of Arabidopsis Brassinosteroid Signaling by Atypical Basic Helix-Loop-Helix Proteins. Plant Cell DOI: 10.1105/tpc.109.072504. (IF = 9.296C)

12. Peng, Z., Zhou, X., Li, L., Yu, X., Li, H., Jiang, Z., Cao, G., Bai, M., Wang, X., Jiang, C., Lu, H., Hou, X., Qu, L., Wang, Z., Zuo, J., Fu, X., Su, Z., Li, S., and Guo, H. (2009). Arabidopsis Hormone Database: a comprehensive genetic and phenotypic information database for plant hormone research in Arabidopsis. Nucleic Acids Res. 37:D975-982. (IF = 6.878C)

13. Zhang, Y., Wang, J., Huang, S., Zhu, X., Liu, J., Yang, N., Song, D., Wu, R., Deng, W., Skogerb?, G., Wang, X., Chen, R. and Zhu, D. (2009). Systematic identification and characterization of chicken (Gallus gallus) ncRNAs. Nucleic Acids Research. 37(19): 6562–6574. (IF = 6.878C)

14. Lai, J., Chen, H., Teng, K., Zhao, Q., Zhang, Z., Li, Y., Liang, L., Xia, R., Wu, Y., Guo, H., and Xie, Q. (2009). RKP, a RING finger E3 ligase induced by BSCTV C4 protein, affects geminivirus infection by regulation of the plant cell cycle. Plant J. 57: 905-917. (IF = 6.493A)

15. Li, S., Qian, Q., Fu, Z., Meng, X., Kyozuka, J., Maekawa, M., Zhu, X., Zhang, J., Li, J. and Wang, Y.(2009). Short panicle1 encodes a putative PTR transporter and determines rice panicle size. Plant J. 58: 592-605. (IF = 6.493A)

16. Li, M., Xiong, G., Li, R., Cui, J., Tang, D., Zhang, B., Pauly, M., Cheng, Z., and Zhou, Y. (2009). Rice cellulose synthase-like D4 is essential for normal cell-wall biosynthesis and plant growth. The Plant Journal.60: 1055–1069. (IF = 6.493A)

17. Tong, H., Jin, Y., Liu, W., Li, F., Fang, J., Yin, Y., Qian, Q., Zhu, L., and Chu, C. (2009). DWARF AND LOW-TILLERING, a new member of GRAS family, plays positive roles in brassinosteroid signaling in rice. Plant Journal. 58: 803-816. (IF = 6.493A)

18. Xiao, H., Tang, J., Li, Y., Wang, W., Li, X., Jin, L., Xie, R., Luo, H., Zhao, X., Meng, Z., He, G., and Zhu, L. (2009). STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice. The Plant Journal. 59: 789-801. (IF = 6.493A)

19. Zhou, Y., Li, S., Qian, Q., Zeng, D., Zhang, M., Guo, L., Liu,.X., Zhang, B., Deng, L., Liu, X., Luo, G., Wang, X., and Li, J. (2009). BC10, A DUF266-Containing and Golgi-Located Type II Membrane Protein, Is Required for Cell Wall Biosynthesis in Rice (Oryza sativa L.). Plant J. 57: 446-462. (IF = 6.493A)

20. Gao, D., Gill, N., Kim, H., Walling, J., Zhang, W., Fan, C., Yu, Y., Ma, J., Miguel, P., Jiang, N., Cheng, Z., Wing, R., Jiang, J., and Jackson, S. (2009). A lineage-specific centromere retrotransposon in Oryza brachyantha. The Plant Journal.60: 820–831. (IF = 6.493C)

21. Huang, L., Yang, S., Zhang, S., Liu, M., Lai, J., Qi, Y., Shi, S., Wang, J., Wang, Y., Xie, Q., and Yang. C. (2009).The Arabidopsis SUMO E3 ligase AtMMS21, a homologue of NSE2/MMS21, regulates cell proliferation in the root. Plant J. 60: 666-678. (IF = 6.493C)

22. Wang, K., Tang, D., Wang, M., Lu, J., Yu, H., Liu, J., Qian, B., Gong, Z., Wang, X., Chen, J., Gu, M., and Cheng, Z. (2009). OsMER3 is required for normal meiotic crossover formation, but not for presynaptic alignment in rice. Journal of Cell Science. 122: 2055-2063. (IF = 6.247A)

23. Bu, Q., Li, H., Zhao, Q., Jiang, H., Zhai, Q., Zhang, J., Wu, X., Sun, J., Xie, Q., Wang, D., Li, C. (2009). The Arabidopsis RING finger E3 ligase RHA2a is a novel positive regulator of abscisic acid signaling during seed germination and early seedling development. Plant Physiol. 150: 463-481. (IF = 6.11A)

24. Ding, X., Richter, T., Chen, M., Fujii, H., Seo, Y., Xie, M., Zheng, X., Kanrar, S., Stevenson, R., Dardick, C., Li, Y., Jiang, H., Zhang, Y., Yu, H., Bartley, L., Chen, M., Bartb, R., Chen, X., Zhu, L., Farmerie, W., Gribskov, M., Zhu J., Fromm, M., Ronald, P., and Song, W. (2009). A Rice Kinase-Protein Interaction Map. Plant Physiology. 149: 1478-1492. (IF = 6.11C)

25. Wang, Y., Feechan, A., Yun, W., Shafiei, R., Hofmann, A., Taylor, P., Xue, P., Yang F., Xie, Z., Pallas, J., Chu, C., and Loake, G. (2009). S-nitrosylation of AtSABP3 antagonizes the expression of plant immunity, Journal of Biological Chemistry. 284(4): 2131-2137. (IF = 5.52B)

26. Besecker M., Harden, M., Li, G., Wang, X., and Griffiths, A. (2009). Discovery of Herpes B Virus-Encoded MicroRNAs. Journal of Virology. 83: 3413-3416. (IF = 5.308C)

27. Chen, R., Sun, S., Wang, C., Li, Y., Liang, Y., An, F., Li, C., Dong, H., Yang, X., Zhang, J., and Zuo, J. (2009). The Arabidopsis PARAQUAT RESISTANT2 gene encodes an S-nitrosoglutathione reductase that is a key regulator of cell death. Cell Res. 19: 1377-1387.(IF = 4.535A)

28. Liang, W., Li, C., Liu, F., Jiang, H., Li, S., Sun, J.., Wu, X., and Li, C. (2009). The Arabidopsis homologs of CCR4-associated factor 1 exhibit mRNA deadenylation activity and play a role in plant defense responses. Cell Research. 19: 307-316.(IF = 4.535A)

29. Mu, R., Cao, Y., Liu, Y., Lei, G., Zou, H., Liao, Y., Wang, H., Zhang, W., Ma, B., Du, J., Yuan, M., Zhang, J., and Chen, S. (2009). An R2R3-type transcription factor gene AtMYB59 regulates root growth and cell cycle progression in Arabidopsis. Cell Research. 19:1291–1304.(IF = 4.535A)

30. Ren, B., Liang, Y., Deng, Y., Chen, Q., Zhang, J., Yang, X., and Zuo, J. (2009). Genome-wide comparative analysis of type-A Arabidopsis response regulator genes by overexpression studies reveals their diverse roles and regulatory mechanisms in cytokinin signaling. Cell Res. 19: 1178-1190.(IF = 4.535A)

31. Wang, X., Niu, Q., Teng, C., Li, C., Mu, J., Chua, N., and Zuo, J. (2009). Overexpression of PGA37/MYB118 and MYB115 promotes vegetative-to-embryonic transition in Arabidopsis. Cell Res. 19: 224-35.(IF = 4.535A)

32. Wu, Y., Deng, Z., Lai, J., Zhang, Y., Yang, C., Yin, B.., Zhao, Q., Zhang, L., Li, Y., Yang, C., and Xie, Q. (2009). Dual function of Arabidopsis ATAF1 in abiotic and biotic stress responses. Cell Res. 19: 1279-1290.(IF = 4.535A)

33. Wang, H., Wang, J., Gao, P., Jiao, G., Zhao, P., Li ,Y., Wang, G., and Xia, G. (2009). Down-regulation of GhADF1 gene expression affects cotton fibre properties. Plant Biotechnol J. 7 (1): 13-23. (IF = 4.419A)

34. Zhou, Z., Li, G., Lin C., and He C. (2009). Conidiophore Stalk-less1 encodes a putative zinc-finger protein involved in the early stage of conidiation and mycelial infection in Magnaporthe oryzae. Molecular Plant-Microbe Interactions. 22: 402–410. (IF = 4.136A)

35. Shang, J., Tao, Y., Chen, X., Zou, Y., Lei, C., Wang, J., Li, X., Zhao, X., Zhang, M., Lu, Z., Xu, J., Cheng, Z., Wan, J., and Zhu, L. (2009). Genome-wide analysis reveals the relationship between the pseudogenization of NBS-LRR genes and functional loss of blast resistance in rice (Oryza sativa L.). Genetics. 182: 1303-1311. (IF = 4.002A)

36. Cheng, X., Zhang, D., Cheng, Z., Keller, B., and Ling, H. (2009). A new family of Ty1-copia-Like retrotransposons originated in the tomato genome by a recent horizontal transfer event. Genetics. 181: 1183–1193. (IF = 4.002C)

37. Li, Z., Huang, S., Liu, S., Pan, J., Zhang, Z., Tao, Q., Shi, Q., Jia, Z., Zhang, W., Chen, H., Si, L. Zhu, L., and Cai, R. (2009). Molecular isolation of the M gene suggests that a conserved-residue conversion induces the formation of bisexual flowers in cucumber plants. Genetics. 182: 1381-1385. (IF = 4.002C)

38. Ruan, M., Zhao, Y., Meng, Z., Wang, X., and Yang, W. (2009). Conserved miRNA analysis in Gossypium hirsutum through small RNA sequencing. Genomics. 94: 263–268. (IF = 4.002C)

39. Zheng, Q., Zhang, Y., Chen, Y., Yang, N., Wang, X., and Zhu, D. (2009). Systematic identification of genes involved in divergent skeletal muscle growth rates of broiler and layer chickens.BMC Genomics. 10: 87.(IF = 3.926B)

40. Huang, Y., Huang, X., Liu, H., Gong, J., Ouyang, Z., Cui, H., Cao, J., Zhao, Y., Wang, X., Jiang, Y., and Qin, Q. (2009). Complete sequence determination of a novel reptile iridovirus isolated from soft-shelled turtle and evolutionary analysis of Iridoviridae. BMC Genomics.10: 224.(IF = 3.926C)

41. Wang, Q., Wan, L., Li, Y., Zhu, L., Qian, M., and Deng, M. (2009). Searching for bidirectional promoters in Arabidopsis thaliana. BMC Bioinformatics. 10 (Suppl 1): S29.(IF = 3.781C)

42. Chen, T.; Liu, J.; Lei, G.; Liu, Y.; Li, Z.; Tao, J.; Hao, Y.; Cao, Y.; Lin, Q.; Zhang, W.; Ma, B.; Chen, S.; and Zhang, J. (2009). Effects of tobacco ethylene receptor mutations on receptor kinase activity, plant growth and stress responses. Plant and Cell Physiology. 50: 1636-50. (IF = 3.542A)

43. Wang, W., Wu, Y., Li, Y., Xie, J., Zhang, Z., Deng, Z., Zhang, Y., Yang, C., Lai, J., Zhang, H., Bao, H., Tang, S., Yang, C., Gao, P., Xia, G., Guo, H., and Xie, Q. (2010).A large insert Thellungiella halophila BIBAC library for genomics and identification of stress tolerance genes. Plant Mol. Biol. 72, 91–99. (IF = 3.541A)

44. Yang, Z., Wu, Y., Li, Y., Ling, H., and Chu, C. (2009). OsMT1a, a type 1 metallothionein, plays the pivotal role in zinc homeostasis and drought tolerance in rice. Plant Molecular Biology. 70(1-2): 219-229. (IF = 3.541A)

45. Zhang, B., Deng, L., Qian, Q., Xiong, G., Zeng, D., Li, R., Guo, L., Li, J., and Zhou, Y. (2009). A missense mutation in the transmembrane domain of CESA4 affects protein abundance in the plasma membrane and results in abnormal cell wall biosynthesis in rice. Plant Mol. Biol. 71: 509-524. (IF = 3.541A)

46. Xue, Y., Zhang, Y., Yang, Q., Li, Q., Cheng, Z., and Dickinson, G. (2009). Genetic features of a pollen-part mutation suggest an inhibitory role for the Antirrhinum pollen self-incompatibility determinant. Plant Mol Biol. 70: 499-509. (IF = 3.541C)

47. Zheng, N., Xia, R., Yang, C., Yin, B., Li, Y., Duan, C., Liang, L., Guo, H., and Xie, Q. (2009).Boosted expression of the SARS-CoV nucleocapsid protein in tobacco and its immunogenicity in mice. Vaccine. 27, 5001–5007. (IF = 3.298A)

48. Ye, J., Qu, J., Zhang, J., Geng, Y., and Fang, R. (2009). A critical domain of the Cucumber mosaic virus 2b protein for RNA silencing suppressor activity. FEBS Letters. 583: 101-106.(IF = 3.264 A)

49. Guo, X., Wu, Y., Wang, Y., Chen, Y., and Chu, C. (2009). OsMSRA4.1 and OsMSRB1.1, two rice plastidial methionine sulfoxide reductases, are involved in abiotic stress responses. Planta. 230: 227-238. (IF = 3.088A)

50. Li, D., Yang, C., Li, X., Gan, Q., Zhao, X., and Zhu, L. (2009). Functional characterization of rice OsDof12. Planta. 229: 1159-1169. (IF = 3.088A)

51. Deng, Z., Li, Y., Xia, R., Wang, W., Huang, X., Zhang, L., Zhang, S., Yang, C., Zhang, Y., Chen, M., and Xie, Q.(2009). Structural analysis of 83-kb genomic DNA from Thellungiella halophila: Sequence features and microcolinearity between salt cress and Arabidopsis thaliana. Genomics. 94: 324–332. (IF = 3.075A)

52. Huang, J., Zhang, K., Shen, Y., Huang, Z., Li, M., Tang, D., Gu, M., and Cheng, Z. (2009). Identification of a high frequency transposon induced by tissue culture, nDaiZ, a member of the hAT family in rice. Genomics. 93: 274–281. (IF = 3.075A)

53. Wang, Y., Li, P., Cao, X., Wang, X., Zhang, A., and Li, X. (2009). Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules. Biochemical and Biophysical Research Communications. 378: 799-803.(IF = 2.648C)

54. Zhou, J., Ma, C., Xu, H., Yuan, K., Lu, X., Zhu, Z., Wu, Y., and Xu, G. (2009).Metabolic profiling of transgenic rice with cryIAc and sck genes: an evaluation of unintended effects at metabolic level by using GC-FID and GC-MS. J. Chromatogr. B. 877:725-732. (IF = 2.5C)

55. Wang, A., Tang, J., Li D., Chen, C., Zhao, X., and Zhu, L. (2009). Isolation and functional analysis of LiYAB1, a YABBY family gene,fromlily (Liliumlongiflorum). Journal of Plant Physiology. 166: 988-995. (IF = 2.437A)

56. Zhang, H., Dong, H., Li, W., Sun, Y., Chen, S., and Kong, X. (2009). Increased glycine betaine synthesis and salinity tolerance in AhCMO transgenic cotton lines. Mol Breeding. 23(2): 289-298.(IF = 2.008C)

57. Xiong, G., Li, J., and Wang, Y.(2009). Advances in the regulation and crosstalks of phytohormones. Chinese Science Bulletin. 54: 4069-4082. (IF = 0.683 A)

58. Chen, C., Zou J., Zhang, S., Zatlin, D., and Zhu, L. (2009). Strigolactones are a new-defined class of plant hormones which inhibit shoot branching and mediate the interaction of plant-AM fungi and plant-parasitic weeds. Science in China Series C: Life Sciences. 52: 693-700. (IF = 0.661A)

59. Yin, B.J., Zhang, N., Li, Y., Tang, S., Liang, L., and Xie, Q. (2009). Growth phase-dependent expression of proteins with decreased plant-specific N-glycans and immunogenicity in tobacco BY2 cells. Science in China Series C, Life Sci. 52(8): 739-746. (IF = 0.661A)

60. Chen, J., Lu, J., Wang, T., Chen, S., and Wang, H. (2009). Activation of a DRE-binding transcription factor from Medicago truncatula by deleting a Ser/Thr-rich region,In Vitro Cellular & Development Biology-Plant. 45(1): 1-11. (IF = 0.503C)

61. Wei, W., Huang, J., Hao, Y., Zou, H., Wang, H., Zhao, J., Liu, X., Zhang, W., Ma, B., Zhang, J., and Chen, S. (2009). Soybean GmPHD-Type Transcription Regulators Improve Stress Tolerance in Transgenic Arabidopsis Plants. PLoS ONE. 4(9): e7209.

62. Xie, Z., Zou, H., Lei ,G., Wei, W., Zhou, Q., Niu, C., Liao, Y., Tian, A., Ma, B., Zhang, W., Zhang, J., and Chen, S. (2009). Soybean Trihelix transcription factors GmGT-2A and GmGT-2B improve plant tolerance to abiotic stresses in transgenic arabidopsis.PLoS ONE. 4(9): e6898.

63. Jiang, H., Li, H., Bu, Q., and Li, C. (2009). The RHA2a-interacting proteins ANAC019 and ANAC055 may play a dual role in regulating ABA response and jasmonate response. Plant Signaling & Behavior. 4(5): 464-466.

64. Liu, P., Wei, W., Ouyang, S., Zhang, J., Chen, S., and Zhang, W. (2009). Analysis of expressed receptor-like kinases (RLKs) in soybean. Journal of Genetics & Gemonics. 36(10): 611-619.

65. Ma, Y., Liu, L., Zhu, C., Sun, C., Xu, B., Fang, F., Tang, J., Luo, A., Cao, S., Li, G., Qian, Q., Xue, Y., and Chu, C. (2009). Molecular analysis of rice plants harboring a multi-functional T-DNA tagging system. Journal of Genetics and Genomics. 36(5): 267-276.

66. Tong, H., and Chu, C. (2009).Roles of DLT in fine modulation on brassinosteroid response in rice, Plant Signaling & Behavior. 4 (5): 438 - 439.

67. 章俊丽, 杨鹍, 张玉满, 颜永胜, 赵志强, 方荣祥, 孙宗修, 傅亚萍, 陈晓英(2009). 水稻OsCIPK10基因的克隆和功能分析. 生物工程学报. 25: 1394-1401. (A)

68. Liu, X., Luo, G., Bai, X., and Wang, X. (2009). Bioinformatic analysis of microRNA biogenesis and function related proteins in eleven animal genomes. Journal of Genetics and Genomics. 36: 591?601.

69. Mueller LA et al. (2009). A snapshot of the emerging tomato genome sequence. The Plant Genome 2: 78-92.

70. Chen, J., Xiong, X., Wang, T., Lu, J., Chen, S., and Wang, H. (2009). Rapid construction of a plant RNA interference expression vector for hairpin RNA–mediated targeting using a PCR-based method. DNA and Cell Biology. 28(12): 1-9.

71. 封华,陈晨,王义琴,邱金龙,储成才,杜希华. (2009). 植物可溶性N-乙基马来酰亚胺敏感因子连接物复合体(SNAREs)及其生物学功能研究进展. 遗传. 31 (5): 471-478. (C)